PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00086.1.g01820.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 453aa    MW: 48841.5 Da    PI: 6.5613
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00086.1.g01820.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS305.71.1e-93794482374
                          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 
                                   +el+l+cA+ ++ gd   a+++++ l  la p+  d+  Rla +f++ALa+r+ +++ e++++  p + s        +a+
  Zjn_sc00086.1.g01820.1.am.mk  79 RELVLACADRLHRGDVDGARRVVEALLSLADPRSdDAADRLAYHFARALARRVDGKGREVAESPVPPAPS-------PSAY 152
                                   5789*************************9998879*******************999999887665555.......4788 PP

                          GRAS  82 klfsevsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskee 157
                                    +++++ P+l+f+hltaNqaIlea+++   +rvHi+D+d+ +G+QWp+Llqa+a+R+    gpp++RiTg g     +++ 
  Zjn_sc00086.1.g01820.1.am.mk 153 LAYNQMAPFLRFAHLTANQAILEAAATGvaRRVHIVDLDAAHGVQWPPLLQAIAERAdpdLGPPEVRITGAGT----DRDV 229
                                   99**********************999878***************************66666***********....**** PP

                          GRAS 158 leetgerLakfAeelgvpfefnvl...vakrledl..eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvks 233
                                   +++tg+rL+ fA++l++pf+f+++     ++l++       L+++p+E+l+Vn+vl lh+l   ++++++    +L+ vks
  Zjn_sc00086.1.g01820.1.am.mk 230 IHRTGDRLRAFASSLNLPFRFHPFllpCPTQLAAYraISTGLELHPDETLVVNCVLFLHQLG-GEGEVAD----FLRWVKS 305
                                   ***********************95552223333311245679999***************8.5555555....******* PP

                          GRAS 234 lsPkvvvvveqeadhnse...sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhet 311
                                   ++P+vv+++e+ea+ ++    ++ +r++ a++yysa+fd+lea +p+ s +r +vE+e+lg+ei  ++    a      ++
  Zjn_sc00086.1.g01820.1.am.mk 306 MNPTVVTIAEREASIGGYcpnDLPRRVAAAMDYYSAVFDALEAMVPPGSADRLSVEHEILGQEIDAAIDPCLAG--GMSRR 384
                                   ************9997654559**********************************************987776..56789 PP

                          GRAS 312 lekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                   +e W ++ ++aG++p pls++a++qa+ llr ++ s+gy vee +g+ +lgW++rpL+svS+W+
  Zjn_sc00086.1.g01820.1.am.mk 385 FEWWASAARAAGLSPRPLSTFAVSQARFLLRLHYpSEGYVVEEARGACFLGWQTRPLMSVSSWQ 448
                                   9**************************************************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098549.87552427IPR005202Transcription factor GRAS
PfamPF035143.9E-9179448IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MHNGTGRMIA NSALSGLCRP ELRFACARAP GCYTGHALLR TLPPDAAMLG APGGGRDDHG  60
EAQPHENRVG PAAAPSSPRE LVLACADRLH RGDVDGARRV VEALLSLADP RSDDAADRLA  120
YHFARALARR VDGKGREVAE SPVPPAPSPS AYLAYNQMAP FLRFAHLTAN QAILEAAATG  180
VARRVHIVDL DAAHGVQWPP LLQAIAERAD PDLGPPEVRI TGAGTDRDVI HRTGDRLRAF  240
ASSLNLPFRF HPFLLPCPTQ LAAYRAISTG LELHPDETLV VNCVLFLHQL GGEGEVADFL  300
RWVKSMNPTV VTIAEREASI GGYCPNDLPR RVAAAMDYYS AVFDALEAMV PPGSADRLSV  360
EHEILGQEID AAIDPCLAGG MSRRFEWWAS AARAAGLSPR PLSTFAVSQA RFLLRLHYPS  420
EGYVVEEARG ACFLGWQTRP LMSVSSWQSA VEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-4911444838375GRAS family transcription factor containing p
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4917420.0AB491742.1 Zoysia japonica ZjLsL gene for lateral suppressor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008645406.10.0PREDICTED: protein MONOCULM 1-like
RefseqXP_008645407.10.0PREDICTED: protein MONOCULM 1-like
SwissprotQ84MM91e-142MOC_ORYSJ; Protein MONOCULM 1
TrEMBLW8VJT60.0W8VJT6_9POAL; Lateral suppressor
STRINGGRMZM2G143433_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36533479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-78GRAS family protein